QuPath H-DAB Project
  • 📊QuPath guide for H-DAB Cell Counting Docs
  • 💡Pipeline
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  • Fundamentals
    • 🛠️Getting Set Up
  • QuPath H-Dab Docs
    • 💡QuPath H-DAB Tutorial
      • Creating and Opening of Projects
      • Estimating Stain Vectors
      • Training Image Creation
      • Cell Detection
      • Object Classifier
      • Tissue Detection
        • 1️⃣Automatic General Tissue Detection
        • 2️⃣Manual Specific Tissue Detection
    • 🧾QuPath Script
      • Batch Processing
    • 📂Output
  • Result Analysis Docs
    • 💡Processing Package Tutorial
      • Addition Information for Python insiders
      • In-Depth Python usage
    • 🗄️Final Spreadsheet creation
    • 🆘Out-of-memory error
  • non-expert docs
    • 🔎QuPath Installation
    • 💻Git Bash Installation
    • 🖥️Python Installation & Packages
    • Git Bash installation
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QuPath Installation

QuPath is a powerful open-source software designed for digital pathology image analysis. Here is a tutorial to get you started with QuPath:

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Last updated 1 year ago

This tutorial is written with the usage of QuPath v05.1 we therefore ask you to work with this version which can be downloaded here:

Step 1: Download and Install QuPath

  1. Visit the QuPath Website: Go to the .

  2. Download QuPath: Navigate to the "Downloads" section and download the appropriate version for your operating system (Windows, macOS, or Linux).

  3. Install QuPath: Follow the installation instructions for your operating system. This typically involves extracting the downloaded files and running the executable.

Be careful of downloading the QuPath version that is compliant with your system (Windows, MacOS, or Linux)

Congratulations! You have successfully installed QuPath!

License:

Bankhead, P. et al. QuPath: Open source software for digital pathology image analysis. Scientific Reports (2017).

To perform the analysis on your images please follow the step by step.

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Release notes v0.5.1
QuPath website
https://doi.org/10.1038/s41598-017-17204-5
QuPath H-DAB tutorial